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genechip command console software version 5.0.0  (Thermo Fisher)


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    Thermo Fisher genechip command console software version 5.0.0
    Genechip Command Console Software Version 5.0.0, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+software/genechip+command+console+software/pm40320038-65-6-12
    Average 90 stars, based on 1 article reviews
    genechip command console software version 5.0.0 - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Genome-Wide Characterization of Menin-Dependent H3K4me3 Reveals a Specific Role for Menin in the Regulation of Genes Implicated in MEN1-Like Tumors
    Article Snippet: Labeled RNA samples were hybridized to Affymetrix Genechip mouse genome 430, 2.0 array. .. Microarray data were normalized and analyzed using the Affymetrix Genechip software, Microarray Analysis Suite 5.0. .. For RT-PCR, DNase I (Ambion) treated RNA samples were reverse transcribed using oligo-dT and SuperScript III (Invitrogen), and the first strand cDNA was used for PCR in standard PCR reactions with Taq Gold (Applied Biosystems).

    Article Title: Actin-microtubule cytoskeletal interplay mediated by MRTF-A/SRF signaling promotes dilated cardiomyopathy caused by LMNA mutations
    Article Snippet: .. Image files were obtained with Affymetrix GeneChip software and subjected to robust multichip analysis using Affymetrix microarray “.cel” image files and GeneTraffic 3.0 software (Stratagene). ..

    Software:

    Article Title: Genome-Wide Characterization of Menin-Dependent H3K4me3 Reveals a Specific Role for Menin in the Regulation of Genes Implicated in MEN1-Like Tumors
    Article Snippet: Labeled RNA samples were hybridized to Affymetrix Genechip mouse genome 430, 2.0 array. .. Microarray data were normalized and analyzed using the Affymetrix Genechip software, Microarray Analysis Suite 5.0. .. For RT-PCR, DNase I (Ambion) treated RNA samples were reverse transcribed using oligo-dT and SuperScript III (Invitrogen), and the first strand cDNA was used for PCR in standard PCR reactions with Taq Gold (Applied Biosystems).

    Article Title: EREG-driven oncogenesis of Head and Neck Squamous Cell Carcinoma exhibits higher sensitivity to Erlotinib therapy
    Article Snippet: The biotin-labeled RNAs were fragmented and used for hybridization to Affymetrix human U133 gene chips. .. The data were analyzed using Affymetrix GeneChip software. ..

    Article Title: Identification of disease causing loci using an array-based genotyping approach on pooled DNA
    Article Snippet: .. The k -correction factor can be calculated for a given SNP using a heterozygote who is AB, effectively 50% A and 50% B. Conveniently, output of the Affymetrix GeneChip software for the Affymetrix 10K Mapping Array includes Relative Allele Signal (RAS) values which have been previously used to determine k -correction values (see Figure ) [ ]. ..

    Article Title: A new non-linear normalization method for reducing variability in DNA microarray experiments
    Article Snippet: For this example, distribution discrepancies appear minor though we have encountered Affymetrix experiments showing dramatically disparate distribution profiles. .. Scaling by the trimmed mean of PM-mismatch (MM), as done by the Affymetrix GeneChip software (MAS 4.0), was observed to separate PM intensity distributions more than is observed for unnormalized data and was not considered in this study. .. Newer versions of the Affymetrix software (MAS 5.0) incorporate additional log-intensity scaling routines that improve normalization performance but were not investigated in this study.

    Article Title: The Role of Oxidative Stress in Nervous System Aging
    Article Snippet: .. Image files were generated by Affymetrix GeneChip software (MAS5). .. The Affymetrix raw data files (CEL files) were analyzed using a local copy of GenePattern, a bioinformatics platform from the Broad Institute .

    Article Title: Actin-microtubule cytoskeletal interplay mediated by MRTF-A/SRF signaling promotes dilated cardiomyopathy caused by LMNA mutations
    Article Snippet: .. Image files were obtained with Affymetrix GeneChip software and subjected to robust multichip analysis using Affymetrix microarray “.cel” image files and GeneTraffic 3.0 software (Stratagene). ..

    Article Title: The IL-10 and IFN-γ pathways are essential to the potent immunosuppressive activity of cultured CD8 + NKT-like cells
    Article Snippet: Arrays were then stained with streptavidin-phycoerythrin (Invitrogen). .. DNA chips were read at a resolution of 3 μm with a Hewlett-Packard GeneArray Scanner and were analyzed with the GENECHIP software (Affymetrix GCOS 1.1). .. Both the CEL and DAT files for each hybridization have been uploaded to our server running GeneTraffic v3.2 (Iobion Informatics LLC, La Jolla, CA, USA).

    Article Title: Functional analysis of an arthritogenic synovial fibroblast
    Article Snippet: cRNA probes were generated and hybridized to the Mu11K (A,B) chip set in accordance with the manufacturer's instructions (Affymetrix, Santa Clara, CA, USA) and as previously described [ ]. .. Data were normalized on the basis of total intensity with the Affymetrix GeneChip software, and data analysis was performed with the Affymetrix GeneChip and the Microsoft Excel software. .. 2 × 10 3 SFs, grown in monolayers and harvested by trypsinization, were placed in 24-well tissue-culture plates in DMEM medium (Gibco/Invitrogen) supplemented with 10% FCS and 100 Units/ml of penicillin/streptomycin.

    Analysis:

    Article Title: Genome-Wide Characterization of Menin-Dependent H3K4me3 Reveals a Specific Role for Menin in the Regulation of Genes Implicated in MEN1-Like Tumors
    Article Snippet: Labeled RNA samples were hybridized to Affymetrix Genechip mouse genome 430, 2.0 array. .. Microarray data were normalized and analyzed using the Affymetrix Genechip software, Microarray Analysis Suite 5.0. .. For RT-PCR, DNase I (Ambion) treated RNA samples were reverse transcribed using oligo-dT and SuperScript III (Invitrogen), and the first strand cDNA was used for PCR in standard PCR reactions with Taq Gold (Applied Biosystems).

    Article Title: Functional analysis of an arthritogenic synovial fibroblast
    Article Snippet: cRNA probes were generated and hybridized to the Mu11K (A,B) chip set in accordance with the manufacturer's instructions (Affymetrix, Santa Clara, CA, USA) and as previously described [ ]. .. Data were normalized on the basis of total intensity with the Affymetrix GeneChip software, and data analysis was performed with the Affymetrix GeneChip and the Microsoft Excel software. .. 2 × 10 3 SFs, grown in monolayers and harvested by trypsinization, were placed in 24-well tissue-culture plates in DMEM medium (Gibco/Invitrogen) supplemented with 10% FCS and 100 Units/ml of penicillin/streptomycin.

    Generated:

    Article Title: The Role of Oxidative Stress in Nervous System Aging
    Article Snippet: .. Image files were generated by Affymetrix GeneChip software (MAS5). .. The Affymetrix raw data files (CEL files) were analyzed using a local copy of GenePattern, a bioinformatics platform from the Broad Institute .



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